If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ), 'gf_id' => 'HOM05D000717', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000717' ), 'data_identifier' => 'HOM05D000717', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000717', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '805', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23510' => 'bna', 'A02p37070' => 'bna', 'A04p11650' => 'bna', 'A04p30800' => 'bna', 'A06p39690' => 'bna', 'A07p19830' => 'bna', 'A07p26710' => 'bna', 'A07p45170' => 'bna', 'A08p05800' => 'bna', 'A08p05830' => 'bna', 'A09p04200' => 'bna', 'A09p49170' => 'bna', 'A09p49180' => 'bna', 'Aa31LG10G11110' => 'aar', 'Aa31LG2G3700' => 'aar', 'Aa31LG4G770' => 'aar', 'Aa31LG5G19140' => 'aar', 'Aa31LG9G16870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2822' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3991' => 'aag', 'Actinidia00985' => 'ach', 'Actinidia10228' => 'ach', 'Actinidia14046' => 'ach', 'Actinidia17613' => 'ach', 'Actinidia18096' => 'ach', 'Actinidia18222' => 'ach', 'Actinidia19289' => 'ach', 'Actinidia25430' => 'ach', 'Actinidia26278' => 'ach', 'Actinidia29739' => 'ach', 'Actinidia36280' => 'ach', 'Ah.01g020340' => 'amhyb', 'Ah.09g226950' => 'amhyb', 'Ah.10g036040' => 'amhyb', 'Ah.10g036050' => 'amhyb', 'Ah.10g038330' => 'amhyb', 'Ah.11g039170' => 'amhyb', 'Ah.16g104070' => 'amhyb', 'AL2G40960' => 'aly', 'AL4G38250' => 'aly', 'AL5G20100' => 'aly', 'AL5G37520' => 'aly', 'AL7G51620' => 'aly', 'Aqoxy3G00571' => 'aox', 'Aqoxy4G02173' => 'aox', 'Aqoxy7G03589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.345BN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FG7TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q7SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.726Z16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AP0NEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZC10Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4XBIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW0L7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL6AU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJ3G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L25L8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MN8TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCMT0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0P7JC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y81JPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT2ZVF' => 'arhy', 'AT1G80510' => 'ath', 'AT2G40420' => 'ath', 'AT3G30390' => 'ath', 'AT3G56200' => 'ath', 'AT5G38820' => 'ath', 'ATR0292G001' => 'atr', 'ATR0681G193' => 'atr', 'ATR0691G070' => 'atr', 'ATR0691G087' => 'atr', 'ATR0691G090' => 'atr', 'ATR0691G095' => 'atr', 'ATR0691G142' => 'atr', 'ATR0739G183' => 'atr', 'ATR0767G191' => 'atr', 'Atru.chr12.125' => 'acertr', 'Atru.chr13.880' => 'acertr', 'Atru.chr2.3886' => 'acertr', 'Atru.chr8.587' => 'acertr', 'AUR62009454' => 'cqu', 'AUR62009457' => 'cqu', 'AUR62011471' => 'cqu', 'AUR62012331' => 'cqu', 'AUR62012332' => 'cqu', 'AUR62016584' => 'cqu', 'AUR62022973' => 'cqu', 'AUR62022974' => 'cqu', 'AUR62023136' => 'cqu', 'AUR62023139' => 'cqu', 'AUR62034988' => 'cqu', 'AUR62039351' => 'cqu', 'BcaB01g00018' => 'bca', 'BcaB01g00019' => 'bca', 'BcaB02g07266' => 'bca', 'BcaB04g19528' => 'bca', 'BcaB05g25262' => 'bca', 'BcaC02g07314' => 'bca', 'BcaC02g09669' => 'bca', 'BcaC02g10347' => 'bca', 'BcaC02g10348' => 'bca', 'BcaC03g15961' => 'bca', 'BcaC04g23811' => 'bca', 'BcaC04g23816' => 'bca', 'BcaC04g23817' => 'bca', 'BcaC04g23822' => 'bca', 'BcaC04g23823' => 'bca', 'BcaC06g30845' => 'bca', 'BcaC06g33721' => 'bca', 'BcaC07g39935' => 'bca', 'BcaC08g44404' => 'bca', 'BcaC08g45320' => 'bca', 'BolC2t09735H' => 'bol', 'BolC2t11662H' => 'bol', 'BolC3t15867H' => 'bol', 'BolC4t24542H' => 'bol', 'BolC4t26120H' => 'bol', 'BolC4t28326H' => 'bol', 'BolC6t37053H' => 'bol', 'BolC6t38088H' => 'bol', 'BolC6t40414H' => 'bol', 'BolC7t44379H' => 'bol', 'BolC8t47494H' => 'bol', 'BolC8t50771H' => 'bol', 'BolC8t50774H' => 'bol', 'BolC9t53372H' => 'bol', 'BraA02t07344Z' => 'bra', 'BraA02t08693Z' => 'bra', 'BraA04t16833Z' => 'bra', 'BraA04t18539Z' => 'bra', 'BraA06t26884Z' => 'bra', 'BraA07t29687Z' => 'bra', 'BraA07t30314Z' => 'bra', 'BraA07t32020Z' => 'bra', 'BraA08t32584Z' => 'bra', 'BraA09t36057Z' => 'bra', 'BraA09t40370Z' => 'bra', 'BraA09t40371Z' => 'bra', 'C02p37250' => 'bna', 'C02p56070' => 'bna', 'C04p30100' => 'bna', 'C04p45380' => 'bna', 'C04p68220' => 'bna', 'C06p18410' => 'bna', 'C06p29230' => 'bna', 'C06p54010' => 'bna', 'C07p38580' => 'bna', 'C08p06460' => 'bna', 'C08p31520' => 'bna', 'C09p04420' => 'bna', 'CAN.G171.1' => 'can', 'CAN.G203.30' => 'can', 'CAN.G407.26' => 'can', 'CAN.G416.3' => 'can', 'CAN.G497.43' => 'can', 'CAN.G737.2' => 'can', 'CAN.G93.46' => 'can', 'CANSAT56G0008' => 'cansat', 'CANSAT56G1035' => 'cansat', 'CANSAT56G1615' => 'cansat', 'CANSAT56G1967' => 'cansat', 'CANSAT64G1892' => 'cansat', 'CARHR074030' => 'chi', 'CARHR135530' => 'chi', 'CARHR153490' => 'chi', 'CARHR166350' => 'chi', 'CARHR263850' => 'chi', 'Carub.0002s2705' => 'cru', 'Carub.0004s2267' => 'cru', 'Carub.0005s0861' => 'cru', 'Carub.0005s2298' => 'cru', 'Carub.0007s3705' => 'cru', 'Ca_01044_v3' => 'car', 'Ca_06014_v3' => 'car', 'Ca_06015_v3' => 'car', 'Ca_06016_v3' => 'car', 'Ca_06963_v3' => 'car', 'Ca_06985_v3' => 'car', 'Ca_15178_v3' => 'car', 'Ca_20755_v3' => 'car', 'Ca_22688_v3' => 'car', 'CBR_g45183' => 'cbr', 'Cc02_g05750' => 'ccan', 'Cc02_g05760' => 'ccan', 'Cc03_g14240' => 'ccan', 'Cc04_g04680' => 'ccan', 'Cc07_g04660' => 'ccan', 'Cc08_g03640' => 'ccan', 'Cc08_g03650' => 'ccan', 'Cc10_g07730' => 'ccan', 'Cc11_g11400' => 'ccan', 'CDE02G1363' => 'cde', 'CDE04G0786' => 'cde', 'CDE04G1914' => 'cde', 'CDE04G2503' => 'cde', 'CDE05G3215' => 'cde', 'CDE07G1391' => 'cde', 'Cfa001239' => 'cfa', 'Cfa001934' => 'cfa', 'Cfa007715' => 'cfa', 'Cfa007717' => 'cfa', 'Cfa008832' => 'cfa', 'Cfa013728' => 'cfa', 'Cfa022042' => 'cfa', 'Ciclev10001103m.g' => 'ccl', 'Ciclev10011669m.g' => 'ccl', 'Ciclev10025468m.g' => 'ccl', 'Ciclev10031586m.g' => 'ccl', 'CiPaw.01G250800' => 'cil', 'CiPaw.01G303500' => 'cil', 'CiPaw.02G158800' => 'cil', 'CiPaw.03G081000' => 'cil', 'CiPaw.04G051000' => 'cil', 'CiPaw.06G095700' => 'cil', 'CiPaw.07G171200' => 'cil', 'ClCG05G026490' => 'cla', 'ClCG07G004780' => 'cla', 'ClCG07G004790' => 'cla', 'ClCG07G016150' => 'cla', 'ClCG09G003120' => 'cla', 'COL.COLO4_00318' => 'col', 'COL.COLO4_11852' => 'col', 'COL.COLO4_25821' => 'col', 'COL.COLO4_25822' => 'col', 'COL.COLO4_25824' => 'col', 'COL.COLO4_28452' => 'col', 'Cpa.g.c44618' => 'cpa', 'Cpa.g.c44825' => 'cpa', 'Cpa.g.sc10.137' => 'cpa', 'Cpa.g.sc14.257' => 'cpa', 'Cpa.g.sc14.258' => 'cpa', 'Cpa.g.sc160.30' => 'cpa', 'Cpa.g.sc19.100' => 'cpa', 'Cpa.g.sc19.101' => 'cpa', 'Cpa.g.sc19.102' => 'cpa', 'Cre02.g115300' => 'cre', 'Cre02.g145700' => 'cre', 'Cre02.g145750' => 'cre', 'Cre06.g264450' => 'cre', 'CsaV3_2G009750' => 'csa', 'CsaV3_4G035330' => 'csa', 'CsaV3_5G010690' => 'csa', 'CsaV3_5G010710' => 'csa', 'CsaV3_7G032130' => 'csa', 'CSS0008356' => 'camsi', 'CSS0014663' => 'camsi', 'CSS0014870' => 'camsi', 'CSS0018988' => 'camsi', 'CSS0029068' => 'camsi', 'CSS0043484' => 'camsi', 'CSS0048659' => 'camsi', 'DCAR_010999' => 'dca', 'DCAR_011001' => 'dca', 'DCAR_011890' => 'dca', 'DCAR_012826' => 'dca', 'DCAR_016280' => 'dca', 'DCAR_025530' => 'dca', 'DCAR_026294' => 'dca', 'DCAR_028546' => 'dca', 'DCAR_030146' => 'dca', 'Dinv10559' => 'din', 'Dinv10560' => 'din', 'Dinv15567' => 'din', 'Dinv21808' => 'din', 'Dinv33881' => 'din', 'Dinv34892' => 'din', 'Dinv38145' => 'din', 'Dinv39201' => 'din', 'Duzib093G1386' => 'dzi', 'Duzib114G0099' => 'dzi', 'Duzib116G0701' => 'dzi', 'Duzib128G1042' => 'dzi', 'Duzib133G0330' => 'dzi', 'Duzib138G0889' => 'dzi', 'Duzib160G0671' => 'dzi', 'Duzib211G0270' => 'dzi', 'ECA232G0604' => 'eca', 'ECA232G0605' => 'eca', 'ECA232G1070' => 'eca', 'ECA232G1706' => 'eca', 'ECA233G3164' => 'eca', 'ECA246G1750' => 'eca', 'ECA246G4373' => 'eca', 'ECA247G0975' => 'eca', 'ECA247G2606' => 'eca', 'EL10Ac1g02343' => 'bvu', 'EL10Ac2g04294' => 'bvu', 'EL10Ac2g04296' => 'bvu', 'EL10Ac2g04297' => 'bvu', 'EL10Ac2g04410' => 'bvu', 'EL10Ac2g04413' => 'bvu', 'EL10Ac3g05786' => 'bvu', 'EL10Ac8g18890' => 'bvu', 'Eucgr.F00102' => 'egr', 'Eucgr.F03925' => 'egr', 'Eucgr.G03109' => 'egr', 'Eucgr.I02085' => 'egr', 'FAN01G0540' => 'fan', 'FAN01G2245' => 'fan', 'FAN02G0540' => 'fan', 'FAN02G3765' => 'fan', 'FAN02G4269' => 'fan', 'FAN03G1291' => 'fan', 'FAN03G3223' => 'fan', 'FAN05G0386' => 'fan', 'FAN05G0416' => 'fan', 'FAN05G2788' => 'fan', 'FAN05G3876' => 'fan', 'FAN05G4139' => 'fan', 'FAN06G0963' => 'fan', 'FAN06G3647' => 'fan', 'FAN09G1931' => 'fan', 'FAN09G3718' => 'fan', 'FAN09G4193' => 'fan', 'FAN10G0218' => 'fan', 'FAN10G3877' => 'fan', 'FAN12G0385' => 'fan', 'FAN12G1254' => 'fan', 'FAN14G2309' => 'fan', 'FAN14G2371' => 'fan', 'FAN14G4085' => 'fan', 'FAN14G4810' => 'fan', 'FAN15G2456' => 'fan', 'FAN17G2944' => 'fan', 'FAN20G2486' => 'fan', 'FAN22G0123' => 'fan', 'FAN24G0619' => 'fan', 'FAN25G1420' => 'fan', 'FAN25G3305' => 'fan', 'FAN27G0234' => 'fan', 'FvH4_2g32550' => 'fve', 'FvH4_4g28960' => 'fve', 'FvH4_6g29140' => 'fve', 'FvH4_6g46060' => 'fve', 'FvH4_6g46080' => 'fve', 'FvH4_7g25490' => 'fve', 'FvH4_7g25500' => 'fve', 'Glyma.02G260100' => 'gma', 'Glyma.02G260200' => 'gma', 'Glyma.02G260300' => 'gma', 'Glyma.06G222400' => 'gma', 'Glyma.08G254200' => 'gma', 'Glyma.11G234600' => 'gma', 'Glyma.13G051100' => 'gma', 'Glyma.13G367500' => 'gma', 'Glyma.14G090200' => 'gma', 'Glyma.15G006000' => 'gma', 'Glyma.18G022400' => 'gma', 'Glyma.18G276800' => 'gma', 'Glyma.19G037400' => 'gma', 'Glyma.19G037500' => 'gma', 'Glyma.U031224' => 'gma', 'Gohir.A02G080000' => 'ghi', 'Gohir.A02G123200' => 'ghi', 'Gohir.A05G332300' => 'ghi', 'Gohir.A06G026600' => 'ghi', 'Gohir.A06G159300' => 'ghi', 'Gohir.A06G159400' => 'ghi', 'Gohir.A07G177500' => 'ghi', 'Gohir.A11G160800' => 'ghi', 'Gohir.A12G056800' => 'ghi', 'Gohir.A13G052401' => 'ghi', 'Gohir.D02G087840' => 'ghi', 'Gohir.D02G087880' => 'ghi', 'Gohir.D03G060602' => 'ghi', 'Gohir.D04G071000' => 'ghi', 'Gohir.D06G023900' => 'ghi', 'Gohir.D06G165200' => 'ghi', 'Gohir.D06G165300' => 'ghi', 'Gohir.D07G185500' => 'ghi', 'Gohir.D11G167100' => 'ghi', 'Gohir.D12G056200' => 'ghi', 'Gorai.001G206000' => 'gra', 'Gorai.002G056200' => 'gra', 'Gorai.005G098500' => 'gra', 'Gorai.007G178200' => 'gra', 'Gorai.008G059300' => 'gra', 'Gorai.010G028400' => 'gra', 'Gorai.010G192600' => 'gra', 'Gorai.010G192700' => 'gra', 'Gorai.012G079900' => 'gra', 'GSVIVG01009289001' => 'vvi', 'GSVIVG01017492001' => 'vvi', 'GSVIVG01032724001' => 'vvi', 'GSVIVG01036513001' => 'vvi', 'HanXRQChr04g0098311' => 'han', 'HanXRQChr05g0156801' => 'han', 'HanXRQChr08g0226361' => 'han', 'HanXRQChr08g0234321' => 'han', 'HanXRQChr09g0251631' => 'han', 'HanXRQChr09g0251641' => 'han', 'HanXRQChr09g0251671' => 'han', 'HanXRQChr12g0365121' => 'han', 'HanXRQChr15g0464921' => 'han', 'HanXRQChr15g0489861' => 'han', 'Haze_11846' => 'cav', 'Haze_14357' => 'cav', 'Haze_14361' => 'cav', 'Haze_16608' => 'cav', 'Haze_17320' => 'cav', 'Haze_22375' => 'cav', 'Hma1.2p1_0292F.1_g115710' => 'hma', 'Hma1.2p1_1240F.1_g269650' => 'hma', 'Hma1.2p1_1926F.1_g307750' => 'hma', 'Hma1.2p1_2378F.1_g320921' => 'hma', 'Hma1.2p1_2466F.1_g322650' => 'hma', 'HPP92_007558' => 'vpl', 'HPP92_018235' => 'vpl', 'HPP92_022030' => 'vpl', 'Hund05269' => 'sun', 'Hund13515' => 'sun', 'Hund13517' => 'sun', 'Hund13660' => 'sun', 'Hund13663' => 'sun', 'Hund15855' => 'sun', 'Hund15856' => 'sun', 'Hund16249' => 'sun', 'Hund16250' => 'sun', 'Lalb_Chr04g0250321' => 'lal', 'Lalb_Chr04g0258301' => 'lal', 'Lalb_Chr05g0228911' => 'lal', 'Lalb_Chr06g0174811' => 'lal', 'Lalb_Chr08g0231361' => 'lal', 'Lalb_Chr10g0092541' => 'lal', 'Lalb_Chr10g0092551' => 'lal', 'Lalb_Chr10g0092571' => 'lal', 'Lalb_Chr10g0105381' => 'lal', 'Lalb_Chr10g0105391' => 'lal', 'Lalb_Chr14g0368021' => 'lal', 'Lalb_Chr17g0336751' => 'lal', 'Lalb_Chr17g0347041' => 'lal', 'Lalb_Chr21g0318131' => 'lal', 'Lj1A963T46' => 'lonja', 'Lj1C963T4' => 'lonja', 'Lj1g0023713' => 'lja', 'Lj2g0018667' => 'lja', 'Lj3g0015992' => 'lja', 'Lj4A127T89' => 'lonja', 'Lj4C76T8' => 'lonja', 'Lj4g0026525' => 'lja', 'Lj5C76T6' => 'lonja', 'Lj6A773T126' => 'lonja', 'Lj6g0001938' => 'lja', 'Lj6g0009964' => 'lja', 'Lj9P497T46' => 'lonja', 'LjContig00357g0015591' => 'lja', 'Lju361C12T8' => 'lonja', 'Lsat_1_v5_gn_1_31221' => 'lsa', 'Lsat_1_v5_gn_4_173900' => 'lsa', 'Lsat_1_v5_gn_4_88200' => 'lsa', 'Lsat_1_v5_gn_8_36800' => 'lsa', 'Lsat_1_v5_gn_8_94000' => 'lsa', 'Lsat_1_v5_gn_9_58660' => 'lsa', 'Lsat_1_v5_gn_9_58680' => 'lsa', 'Manes.01G105000' => 'mes', 'Manes.02G061400' => 'mes', 'Manes.04G108400' => 'mes', 'Manes.07G137200' => 'mes', 'Manes.07G137300' => 'mes', 'Manes.11G061300' => 'mes', 'Manes.14G091800' => 'mes', 'Manes.18G050600' => 'mes', 'Mapoly0005s0078' => 'mpo', 'Mapoly0015s0160' => 'mpo', 'Mapoly0026s0132' => 'mpo', 'Mapoly0118s0030' => 'mpo', 'MBI14_g08225_MAGBIO' => 'mbi', 'MBI14_g46488_MAGBIO' => 'mbi', 'MBI15_g20028_MAGBIO' => 'mbi', 'MBI15_g20029_MAGBIO' => 'mbi', 'MBI15_g24405_MAGBIO' => 'mbi', 'MBI15_g28965_MAGBIO' => 'mbi', 'MBI15_g37536_MAGBIO' => 'mbi', 'MCO01G776' => 'mco', 'MCO04G372' => 'mco', 'MCO11G193' => 'mco', 'MCO14G459' => 'mco', 'MD01G1161200' => 'mdo', 'MD01G1161300' => 'mdo', 'MD06G1044000' => 'mdo', 'MD07G1229200' => 'mdo', 'MD09G1077200' => 'mdo', 'MD09G1077400' => 'mdo', 'MD13G1055200' => 'mdo', 'MD15G1064300' => 'mdo', 'MD16G1053900' => 'mdo', 'MD17G1067600' => 'mdo', 'MD17G1067800' => 'mdo', 'MD17G1217500' => 'mdo', 'Medtr0658s0030' => 'mtr', 'Medtr1396s0010' => 'mtr', 'Medtr2g104180' => 'mtr', 'Medtr3g072105' => 'mtr', 'Medtr3g072110' => 'mtr', 'Medtr4g032100' => 'mtr', 'Medtr5g083760' => 'mtr', 'Medtr5g083770' => 'mtr', 'Medtr6g016245' => 'mtr', 'Medtr6g016270' => 'mtr', 'Medtr6g016275' => 'mtr', 'Medtr6g016295' => 'mtr', 'Medtr6g024240' => 'mtr', 'Medtr7g017630' => 'mtr', 'Medtr8g065630' => 'mtr', 'MELO3C008709.2' => 'cme', 'MELO3C016843.2' => 'cme', 'MELO3C020105.2' => 'cme', 'MELO3C020106.2' => 'cme', 'MELO3C023446.2' => 'cme', 'Migut.C00445' => 'egut', 'Migut.D01088' => 'egut', 'Migut.E00259' => 'egut', 'Migut.F00578' => 'egut', 'Migut.F01267' => 'egut', 'Migut.H00574' => 'egut', 'MSTRG.13476' => 'ama', 'MSTRG.25017' => 'ama', 'MSTRG.2966' => 'ama', 'MSTRG.4697' => 'ama', 'MSTRG.8908' => 'ama', 'MSTRG.926' => 'ama', 'Nitab4.5_0000263g0040' => 'nta', 'Nitab4.5_0000263g0080' => 'nta', 'Nitab4.5_0000263g0110' => 'nta', 'Nitab4.5_0000375g0070' => 'nta', 'Nitab4.5_0000928g0090' => 'nta', 'Nitab4.5_0000928g0100' => 'nta', 'Nitab4.5_0001271g0060' => 'nta', 'Nitab4.5_0001494g0080' => 'nta', 'Nitab4.5_0002171g0090' => 'nta', 'Nitab4.5_0002249g0080' => 'nta', 'Nitab4.5_0002322g0050' => 'nta', 'Nitab4.5_0002978g0050' => 'nta', 'Nitab4.5_0003157g0060' => 'nta', 'Nitab4.5_0003203g0050' => 'nta', 'Nitab4.5_0007871g0010' => 'nta', 'Nitab4.5_0009785g0060' => 'nta', 'Nitab4.5_0011429g0020' => 'nta', 'Nn2g11055' => 'nnu', 'Nn2g12195' => 'nnu', 'Nn3g17575' => 'nnu', 'Nn4g23571' => 'nnu', 'Nn6g34539' => 'nnu', 'Nn8g39651' => 'nnu', 'Oeu022014.1' => 'oeu', 'Oeu026259.1' => 'oeu', 'Oeu032841.1' => 'oeu', 'Oeu040618.1' => 'oeu', 'Oeu043146.1' => 'oeu', 'Oeu043147.1' => 'oeu', 'Oeu054170.1' => 'oeu', 'Oeu054434.1' => 'oeu', 'Os01g0825800' => 'osa', 'Os02g0191300' => 'osa', 'Os02g0727100' => 'osa', 'Os06g0275800' => 'osa', 'Os06g0633800' => 'osa', 'Os06g0644700' => 'osa', 'Peaxi162Scf00019g00321' => 'pax', 'Peaxi162Scf00020g02020' => 'pax', 'Peaxi162Scf00167g01331' => 'pax', 'Peaxi162Scf00284g00125' => 'pax', 'Peaxi162Scf00284g00135' => 'pax', 'Peaxi162Scf00332g00118' => 'pax', 'Peaxi162Scf01149g00020' => 'pax', 'Peaxi162Scf01161g00322' => 'pax', 'PGR004G1798' => 'pgr', 'PGR083G2476' => 'pgr', 'PGR102G2592' => 'pgr', 'PGR142G2965' => 'pgr', 'PGSC0003DMG400001474' => 'stu', 'PGSC0003DMG400011639' => 'stu', 'PGSC0003DMG400014203' => 'stu', 'PGSC0003DMG400026549' => 'stu', 'PGSC0003DMG400029153' => 'stu', 'PGSC0003DMG400029154' => 'stu', 'PGSC0003DMG401004944' => 'stu', 'PGSC0003DMG402004944' => 'stu', 'Phvul.001G248000' => 'pvu', 'Phvul.004G045100' => 'pvu', 'Phvul.004G045200' => 'pvu', 'Phvul.005G179900' => 'pvu', 'Phvul.008G024100' => 'pvu', 'Phvul.008G219100' => 'pvu', 'Phvul.008G219200' => 'pvu', 'Phvul.009G198000' => 'pvu', 'Potri.001G204400' => 'ptr', 'Potri.002G114300' => 'ptr', 'Potri.003G011900' => 'ptr', 'Potri.004G111400' => 'ptr', 'Potri.008G075500' => 'ptr', 'Potri.010G136601' => 'ptr', 'Potri.010G181800' => 'ptr', 'Potri.017G106300' => 'ptr', 'Pp3c10_3550' => 'ppa', 'Pp3c14_19010' => 'ppa', 'Pp3c15_7540' => 'ppa', 'Pp3c18_17440' => 'ppa', 'Pp3c19_4840' => 'ppa', 'Pp3c22_4010' => 'ppa', 'PRCOL_00000710' => 'pco', 'PRCOL_00001294' => 'pco', 'PRCOL_00005027' => 'pco', 'PRCOL_00005303' => 'pco', 'PRCOL_00005351' => 'pco', 'Prupe.1G295800' => 'ppe', 'Prupe.1G418300' => 'ppe', 'Prupe.2G259300' => 'ppe', 'Prupe.2G259400' => 'ppe', 'Prupe.3G093200' => 'ppe', 'Prupe.3G246600' => 'ppe', 'Prupe.3G246800' => 'ppe', 'Prupe.3G246900' => 'ppe', 'Psat0s3650g0440' => 'psa', 'Psat1g064280' => 'psa', 'Psat1g064360' => 'psa', 'Psat1g064440' => 'psa', 'Psat1g064480' => 'psa', 'Psat1g064560' => 'psa', 'Psat1g066200' => 'psa', 'Psat2g029040' => 'psa', 'Psat2g029720' => 'psa', 'Psat3g194360' => 'psa', 'Psat4g123360' => 'psa', 'Psat5g130200' => 'psa', 'Psat5g131840' => 'psa', 'Psat5g131880' => 'psa', 'Psat5g303720' => 'psa', 'Psat6g016720' => 'psa', 'PSO017G0709' => 'pso', 'PSO017G1817' => 'pso', 'PSO017G5851' => 'pso', 'PSO017G6824' => 'pso', 'PSO170G0437' => 'pso', 'PSO478G0971' => 'pso', 'PSO541G0499' => 'pso', 'PSO541G0574' => 'pso', 'PSO541G1566' => 'pso', 'PSO675G2730' => 'pso', 'PSO675G7962' => 'pso', 'PSO781G0263' => 'pso', 'QL02p063571' => 'qlo', 'QL02p063698' => 'qlo', 'QL03p073162' => 'qlo', 'QL05p032962' => 'qlo', 'QL08p059922' => 'qlo', 'QL08p064236' => 'qlo', 'QL08p064251' => 'qlo', 'RcHm_v2.0_Chr1g0371451' => 'rch', 'RcHm_v2.0_Chr1g0371471' => 'rch', 'RcHm_v2.0_Chr2g0117941' => 'rch', 'RcHm_v2.0_Chr2g0134331' => 'rch', 'RcHm_v2.0_Chr2g0164381' => 'rch', 'RcHm_v2.0_Chr2g0164401' => 'rch', 'RcHm_v2.0_Chr4g0437101' => 'rch', 'RcHm_v2.0_Chr6g0310121' => 'rch', 'Rhsim03G0149400' => 'rsi', 'Rhsim06G0065200' => 'rsi', 'Rhsim08G0078600' => 'rsi', 'Rhsim08G0210100' => 'rsi', 'Rhsim09G0182700' => 'rsi', 'Rhsim09G0183200' => 'rsi', 'Rhsim10G0060600' => 'rsi', 'Rhsim12G0070000' => 'rsi', 'Sabra02G0090500' => 'sbr', 'Sabra03G0016400' => 'sbr', 'Sabra04G0073000' => 'sbr', 'Sabra05G0113600' => 'sbr', 'Sabra08G0056000' => 'sbr', 'Sabra10G0139200' => 'sbr', 'Sabra15G0038400' => 'sbr', 'Sabra16G0095000' => 'sbr', 'Sabra17G0089300' => 'sbr', 'SalBow1G5501' => 'sbo', 'SalBow5G1013' => 'sbo', 'SalBow5G4789' => 'sbo', 'SalBow6G4850' => 'sbo', 'SalBow7G2160' => 'sbo', 'Sc02g0008190' => 'sci', 'Sc10g0000500' => 'sci', 'Sc10g0006070' => 'sci', 'Sc11g0005610' => 'sci', 'Sc14g0005590' => 'sci', 'Sed0003110' => 'sed', 'Sed0004523' => 'sed', 'Sed0008618' => 'sed', 'Sed0012305' => 'sed', 'Sed0021493' => 'sed', 'Sed0026102' => 'sed', 'Sed0026484' => 'sed', 'SEGI_00609' => 'sgi', 'SEGI_04711' => 'sgi', 'SEGI_06579' => 'sgi', 'SEGI_21383' => 'sgi', 'SEGI_35745' => 'sgi', 'SEGI_37687' => 'sgi', 'SEGI_41258' => 'sgi', 'SGA_v2.0_scaffold238G43899' => 'sas', 'SGA_v2.0_scaffold26G11335' => 'sas', 'SGA_v2.0_scaffold282G46932' => 'sas', 'SGA_v2.0_scaffold287G47201' => 'sas', 'SGA_v2.0_scaffold4G02352' => 'sas', 'SGA_v2.0_scaffold52G19061' => 'sas', 'SGA_v2.0_scaffold60G20936' => 'sas', 'SHI11245' => 'shi', 'SHI33627' => 'shi', 'SHI33628' => 'shi', 'SMO364G0622' => 'smo', 'SMO367G1032' => 'smo', 'Solyc02g065680.3' => 'sly', 'Solyc02g089400.4' => 'sly', 'Solyc03g117350.1' => 'sly', 'Solyc04g077460.3' => 'sly', 'Solyc05g052300.4' => 'sly', 'Solyc06g050790.3' => 'sly', 'Solyc06g050800.4' => 'sly', 'Solyc09g059850.3' => 'sly', 'Sopen02g015900' => 'spe', 'Sopen02g034160' => 'spe', 'Sopen03g036240' => 'spe', 'Sopen04g031050' => 'spe', 'Sopen05g030860' => 'spe', 'Sopen06g016460' => 'spe', 'Sopen06g016480' => 'spe', 'Sp2g18180' => 'spa', 'Sp4g22760' => 'spa', 'Sp5g06300' => 'spa', 'Sp5g35290' => 'spa', 'Sp7g03110' => 'spa', 'Sp7g03120' => 'spa', 'SpUn1066_0010' => 'spa', 'TAR100G0003' => 'tar', 'TAR170G0006' => 'tar', 'TAR374G1138' => 'tar', 'TAR381G0183' => 'tar', 'TAR381G0799' => 'tar', 'TAR622G0751' => 'tar', 'TAR623G0557' => 'tar', 'TAR625G0508' => 'tar', 'TAR629G2920' => 'tar', 'TAR629G3079' => 'tar', 'TAR633G2628' => 'tar', 'THA.LOC104805536' => 'tha', 'THA.LOC104810135' => 'tha', 'THA.LOC104812461' => 'tha', 'THA.LOC104823877' => 'tha', 'Thecc.04G110400' => 'tca', 'Thecc.04G110500' => 'tca', 'Thecc.06G033400' => 'tca', 'Thecc.08G083400' => 'tca', 'Thecc.10G007300' => 'tca', 'Thecc.10G007500' => 'tca', 'Thecc.10G007600' => 'tca', 'Thhalv10004179m.g' => 'esa', 'Thhalv10005990m.g' => 'esa', 'Thhalv10016652m.g' => 'esa', 'Thhalv10018453m.g' => 'esa', 'Thhalv10019785m.g' => 'esa', 'Thhalv10028319m.g' => 'esa', 'TPR.G13183' => 'tpr', 'TPR.G15951' => 'tpr', 'TPR.G15958' => 'tpr', 'TPR.G20210' => 'tpr', 'TPR.G22139' => 'tpr', 'TPR.G28640' => 'tpr', 'TPR.G29770' => 'tpr', 'TPR.G3301' => 'tpr', 'TPR.G37185' => 'tpr', 'TPR.G40074' => 'tpr', 'TWI09G0478' => 'twi', 'TWI09G0562' => 'twi', 'TWI18G1340' => 'twi', 'TWI32G0885' => 'twi', 'TWI34G0827' => 'twi', 'TWI56G0759' => 'twi', 'TWI73G0926' => 'twi', 'unitig_52.g17076' => 'ugi', 'unitig_736.g22263' => 'ugi', 'unitig_748.g7004' => 'ugi', 'unitig_748.g7550' => 'ugi', 'unitig_899.g14787' => 'ugi', 'unitig_899.g15115' => 'ugi', 'vmacro01289' => 'vma', 'vmacro05602' => 'vma', 'vmacro06923' => 'vma', 'vmacro09983' => 'vma', 'vmacro09985' => 'vma', 'vmacro18117' => 'vma', 'vmacro19024' => 'vma', 'vmacro21409' => 'vma', 'VMungo0464G0534' => 'vmu', 'VMungo0464G1796' => 'vmu', 'VMungo0647G0802' => 'vmu', 'VMungo0647G2313' => 'vmu', 'VMungo0767G0001' => 'vmu', 'VMungo1309G1733' => 'vmu', 'VMungo1383G0845' => 'vmu', 'VMungo1383G1802' => 'vmu', 'Zm00001eb189540' => 'zma', 'Zm00001eb234980' => 'zma', 'Zm00001eb368680' => 'zma', 'Zm00001eb380520' => 'zma', 'Zm00001eb386970' => 'zma', 'Zm00001eb387570' => 'zma' ) $gf_id = 'HOM05D000717' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000717' ) $data_identifier = 'HOM05D000717' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 9, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 20, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 33, 'fve' => (int) 7, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 14, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 8, 'psa' => (int) 16, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387570' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1